STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A109FGH3RRM domain-containing protein. (77 aa)    
Predicted Functional Partners:
A0A109FJW2
Suf-domain-containing protein.
   
 0.998
A0A120E9D5
Endoribonuclease YSH1.
   
 0.989
A0A125PI04
CPSF_A domain-containing protein.
   
 0.988
A0A109FD91
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.984
A0A120E6U0
Uncharacterized protein.
   
 0.984
CLP1
mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.
   
 0.984
A0A109FIH6
Uncharacterized protein.
   
 0.981
A0A109FFE3
CID domain-containing protein.
    
 0.977
A0A109FJA6
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
    
 0.977
A0A120E835
WD40 repeat-like protein.
    
 0.977
Your Current Organism:
Rhodotorula sp. JG1b
NCBI taxonomy Id: 1305733
Other names: R. sp. JG-1b, Rhodotorula sp. JG-1b
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.