A0A109FHU4 protein (Rhodotorula sp. JG1b) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A109FHU4

Uncharacterized protein. (793 aa)

Predicted Functional Partners:

A0A109FB11

0.619

A0A109FJV6

0.614

A0A109FLL8

0.614

A0A109FLE7

0.613

A0A120E7N0

0.613

A0A120E8C9

0.613

A0A109FGH1

0.612

A0A109FH55

0.612

A0A109FJ63

0.612

A0A109FL59

0.612

Your Current Organism:

Rhodotorula sp. JG1b

NCBI taxonomy Id: 1305733
Other names: R. sp. JG-1b, Rhodotorula sp. JG-1b

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A109FB11	A0A109FGH1	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A109FB11	A0A109FH55	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.996
A0A109FB11	A0A109FHU4	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.619
A0A109FB11	A0A109FJ63	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S10.	0.996
A0A109FB11	A0A109FJV6	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.995
A0A109FB11	A0A109FL59	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	MRP-S28 domain-containing protein.	0.997
A0A109FB11	A0A109FLE7	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Translational machinery component.	0.990
A0A109FB11	A0A109FLL8	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S2.	0.995
A0A109FB11	A0A120E7N0	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
A0A109FGH1	A0A109FB11	Ribosomal protein S5 domain 2-like protein.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.999
A0A109FGH1	A0A109FH55	Ribosomal protein S5 domain 2-like protein.	Uncharacterized protein.	0.999
A0A109FGH1	A0A109FHU4	Ribosomal protein S5 domain 2-like protein.	Uncharacterized protein.	0.612
A0A109FGH1	A0A109FJ63	Ribosomal protein S5 domain 2-like protein.	Ribosomal protein S10.	0.999
A0A109FGH1	A0A109FJV6	Ribosomal protein S5 domain 2-like protein.	Uncharacterized protein.	0.999
A0A109FGH1	A0A109FL59	Ribosomal protein S5 domain 2-like protein.	MRP-S28 domain-containing protein.	0.997
A0A109FGH1	A0A109FLE7	Ribosomal protein S5 domain 2-like protein.	Translational machinery component.	0.999
A0A109FGH1	A0A109FLL8	Ribosomal protein S5 domain 2-like protein.	Ribosomal protein S2.	0.999
A0A109FGH1	A0A120E7N0	Ribosomal protein S5 domain 2-like protein.	Uncharacterized protein.	0.999
A0A109FH55	A0A109FB11	Uncharacterized protein.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.996
A0A109FH55	A0A109FGH1	Uncharacterized protein.	Ribosomal protein S5 domain 2-like protein.	0.999