STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A109FI58Deoxythymidylate kinase. (234 aa)    
Predicted Functional Partners:
A0A109FHL3
Flavo protein.
  
 
 0.958
A0A109FIM7
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 
 0.957
A0A109FJM2
Thymidylate synthase.
  
 
 0.956
A0A120E7K8
CMP/dCMP-type deaminase domain-containing protein.
    
 0.946
A0A109FNI9
dUTP diphosphatase.
  
 
 0.945
A0A120E612
Nucleoside diphosphate kinase.
    
 0.938
A0A109FKG6
DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.
    
 0.890
A0A109FD83
Uridylate kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and dUMP as phosphate acceptors, but can also use CMP, dCMP and AMP. Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.
    
 0.886
A0A109FDC0
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
    
 0.860
A0A125PID4
Nucleoside diphosphate kinase.
    
 0.841
Your Current Organism:
Rhodotorula sp. JG1b
NCBI taxonomy Id: 1305733
Other names: R. sp. JG-1b, Rhodotorula sp. JG-1b
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