A0A109FMV1 protein (Rhodotorula sp. JG1b) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A109FMV1

Uncharacterized protein. (1142 aa)

Predicted Functional Partners:

A0A109FHI8

0.988

A0A109FNF6

0.973

A0A109FM46

0.947

A0A109FHL7

0.937

A0A109FFZ2

0.935

A0A120E8J8

0.926

NOP7

0.903

A0A125PID7

0.902

A0A120E5M0

0.900

A0A125PJ35

0.896

Your Current Organism:

Rhodotorula sp. JG1b

NCBI taxonomy Id: 1305733
Other names: R. sp. JG-1b, Rhodotorula sp. JG-1b

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A109FFZ2	A0A109FHI8	A0A109FFZ2	A0A109FHI8	DEAD-domain-containing protein.	Noc2-domain-containing protein.	0.938
A0A109FFZ2	A0A109FHL7	A0A109FFZ2	A0A109FHL7	DEAD-domain-containing protein.	Uncharacterized protein.	0.934
A0A109FFZ2	A0A109FM46	A0A109FFZ2	A0A109FM46	DEAD-domain-containing protein.	Uncharacterized protein.	0.792
A0A109FFZ2	A0A109FMV1	A0A109FFZ2	A0A109FMV1	DEAD-domain-containing protein.	Uncharacterized protein.	0.935
A0A109FFZ2	A0A109FNF6	A0A109FFZ2	A0A109FNF6	DEAD-domain-containing protein.	Uncharacterized protein.	0.908
A0A109FFZ2	A0A120E5M0	A0A109FFZ2	A0A120E5M0	DEAD-domain-containing protein.	Uncharacterized protein.	0.796
A0A109FFZ2	A0A120E8J8	A0A109FFZ2	A0A120E8J8	DEAD-domain-containing protein.	GTP binding protein 4.	0.928
A0A109FFZ2	A0A125PID7	A0A109FFZ2	A0A125PID7	DEAD-domain-containing protein.	NOL1/NOP2/sun family putative RNA met; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.923
A0A109FFZ2	A0A125PJ35	A0A109FFZ2	A0A125PJ35	DEAD-domain-containing protein.	Brix-domain-containing protein.	0.990
A0A109FFZ2	NOP7	A0A109FFZ2	A0A120E795	DEAD-domain-containing protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.958
A0A109FHI8	A0A109FFZ2	A0A109FHI8	A0A109FFZ2	Noc2-domain-containing protein.	DEAD-domain-containing protein.	0.938
A0A109FHI8	A0A109FHL7	A0A109FHI8	A0A109FHL7	Noc2-domain-containing protein.	Uncharacterized protein.	0.971
A0A109FHI8	A0A109FM46	A0A109FHI8	A0A109FM46	Noc2-domain-containing protein.	Uncharacterized protein.	0.947
A0A109FHI8	A0A109FMV1	A0A109FHI8	A0A109FMV1	Noc2-domain-containing protein.	Uncharacterized protein.	0.988
A0A109FHI8	A0A109FNF6	A0A109FHI8	A0A109FNF6	Noc2-domain-containing protein.	Uncharacterized protein.	0.992
A0A109FHI8	A0A120E5M0	A0A109FHI8	A0A120E5M0	Noc2-domain-containing protein.	Uncharacterized protein.	0.998
A0A109FHI8	A0A120E8J8	A0A109FHI8	A0A120E8J8	Noc2-domain-containing protein.	GTP binding protein 4.	0.991
A0A109FHI8	A0A125PID7	A0A109FHI8	A0A125PID7	Noc2-domain-containing protein.	NOL1/NOP2/sun family putative RNA met; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.996
A0A109FHI8	A0A125PJ35	A0A109FHI8	A0A125PJ35	Noc2-domain-containing protein.	Brix-domain-containing protein.	0.992
A0A109FHI8	NOP7	A0A109FHI8	A0A120E795	Noc2-domain-containing protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995