STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A120E779Uncharacterized protein. (668 aa)    
Predicted Functional Partners:
A0A109FG50
Uncharacterized protein.
    
 
 0.949
A0A109FB98
Nuclear cap-binding protein subunit 2.
    
 
 0.928
A0A109FJ82
Transportin-PC.
    
 
 0.922
A0A120E949
NTF2-like protein.
    
 
 0.828
A0A125PJD0
Putative ATP-dependent RNA helicase.
    
 
 0.761
A0A109FFS1
Uncharacterized protein.
    
 
 0.750
A0A109FGM9
RRM domain-containing protein.
    
 
 0.737
A0A109FGT0
FoP_duplication domain-containing protein.
    
 
 0.737
A0A109FLC7
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 
 0.715
A0A125PHM0
Putative YEF3-translation elongation factor eEF3.
    
   0.712
Your Current Organism:
Rhodotorula sp. JG1b
NCBI taxonomy Id: 1305733
Other names: R. sp. JG-1b, Rhodotorula sp. JG-1b
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