STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHSY_002260Likely histone deacetylase. (562 aa)    
Predicted Functional Partners:
PHSY_006817
DNA binding transcription factor.
    
 0.948
PHSY_005330
Essential component of the nuclear pore complex.
     
 0.942
PHSY_002261
Histone deacetylase complex protein.
 
      0.900
PHSY_005943
WD_REPEATS_REGION domain-containing protein.
   
 0.799
PHSY_001051
HDAC_interact domain-containing protein.
    
 0.750
PHSY_000258
Uncharacterized protein.
    
 0.729
PHSY_003386
Chromo domain-containing protein required for cell polarity.
    
 0.729
PHSY_004055
Histone H2B; Belongs to the histone H2B family.
    
 0.729
PHSY_006504
Uncharacterized protein.
    
 0.727
PHSY_001049
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.707
Your Current Organism:
Pseudozyma hubeiensis
NCBI taxonomy Id: 1305764
Other names: P. hubeiensis SY62, Pseudozyma hubeiensis SY62
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.