STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001592145_00516Unannotated protein. (296 aa)    
Predicted Functional Partners:
GCA_001592145_00469
Unannotated protein.
 
  
 0.954
GCA_001592145_01298
Unannotated protein.
 
  
 0.953
GCA_001592145_02697
Unannotated protein.
 
  
 0.952
GCA_001592145_02548
Unannotated protein.
    
 0.940
GCA_001592145_01956
Unannotated protein.
    
 0.934
GCA_001592145_01917
Unannotated protein.
    
 0.918
GCA_001592145_00518
Unannotated protein.
 
  
 0.890
GCA_001592145_02043
Unannotated protein.
 
  
 0.887
GCA_001592145_00082
Unannotated protein.
    
 0.880
GCA_001592145_01630
Unannotated protein.
 
  
 0.876
Your Current Organism:
Xylanimicrobium pachnodae
NCBI taxonomy Id: 1305855
Other names: X. pachnodae JCM 13526 = NBRC 107786, Xylanimicrobium pachnodae JCM 13526, Xylanimicrobium pachnodae JCM 13526 = NBRC 107786, Xylanimicrobium pachnodae NBRC 107786, Xylanimicrobium pachnodae NBRC 107786 = JCM 13526
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.