STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001592145_00955Unannotated protein. (323 aa)    
Predicted Functional Partners:
GCA_001592145_03645
Unannotated protein.
 
 0.965
GCA_001592145_03686
Unannotated protein.
 
 
 0.920
GCA_001592145_02490
Unannotated protein.
  
   
 0.830
GCA_001592145_00954
Unannotated protein.
       0.773
GCA_001592145_02183
Unannotated protein.
  
    0.772
GCA_001592145_00729
Unannotated protein.
  
   
 0.661
GCA_001592145_00956
Unannotated protein.
       0.636
GCA_001592145_01850
Unannotated protein.
  
 
 0.606
GCA_001592145_00418
Unannotated protein.
  
 
 0.523
GCA_001592145_00950
Unannotated protein.
       0.503
Your Current Organism:
Xylanimicrobium pachnodae
NCBI taxonomy Id: 1305855
Other names: X. pachnodae JCM 13526 = NBRC 107786, Xylanimicrobium pachnodae JCM 13526, Xylanimicrobium pachnodae JCM 13526 = NBRC 107786, Xylanimicrobium pachnodae NBRC 107786, Xylanimicrobium pachnodae NBRC 107786 = JCM 13526
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.