STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001592145_02410Unannotated protein. (67 aa)    
Predicted Functional Partners:
GCA_001592145_03478
Unannotated protein.
    
  0.765
GCA_001592145_01748
Unannotated protein.
   
   0.749
GCA_001592145_00711
Unannotated protein.
   
 0.730
GCA_001592145_01957
Unannotated protein.
   
 0.730
GCA_001592145_02502
Unannotated protein.
   
 0.730
GCA_001592145_01723
Unannotated protein.
   
   0.720
GCA_001592145_02134
Unannotated protein.
    
 0.706
GCA_001592145_00520
Unannotated protein.
   
 
 0.676
GCA_001592145_00336
Unannotated protein.
   
   0.669
GCA_001592145_00481
Unannotated protein.
    
 0.668
Your Current Organism:
Xylanimicrobium pachnodae
NCBI taxonomy Id: 1305855
Other names: X. pachnodae JCM 13526 = NBRC 107786, Xylanimicrobium pachnodae JCM 13526, Xylanimicrobium pachnodae JCM 13526 = NBRC 107786, Xylanimicrobium pachnodae NBRC 107786, Xylanimicrobium pachnodae NBRC 107786 = JCM 13526
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.