STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001592145_03454Unannotated protein. (403 aa)    
Predicted Functional Partners:
GCA_001592145_03455
Unannotated protein.
 0.996
GCA_001592145_01008
Unannotated protein.
 0.984
GCA_001592145_01465
Unannotated protein.
 
 0.982
GCA_001592145_03452
Unannotated protein.
 
  
 0.970
GCA_001592145_01009
Unannotated protein.
  
 0.942
GCA_001592145_00997
Unannotated protein.
 
  
 0.847
GCA_001592145_03453
Unannotated protein.
       0.773
GCA_001592145_00235
Unannotated protein.
    
 0.730
GCA_001592145_02802
Unannotated protein.
    
 0.730
GCA_001592145_01007
Unannotated protein.
  
     0.720
Your Current Organism:
Xylanimicrobium pachnodae
NCBI taxonomy Id: 1305855
Other names: X. pachnodae JCM 13526 = NBRC 107786, Xylanimicrobium pachnodae JCM 13526, Xylanimicrobium pachnodae JCM 13526 = NBRC 107786, Xylanimicrobium pachnodae NBRC 107786, Xylanimicrobium pachnodae NBRC 107786 = JCM 13526
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.