STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J120_00795Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)    
Predicted Functional Partners:
J120_00800
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
J120_02195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.733
J120_00790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.714
J120_04180
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.586
gatA
Hypothetical protein; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
   
  0.585
J120_00805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.539
J120_03355
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.523
J120_00590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.491
J120_01550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.491
cysS
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.480
Your Current Organism:
candidate division TM6 bacterium JCVITM6SC1
NCBI taxonomy Id: 1306947
Other names: c. division TM6 bacterium JCVI TM6SC1, candidate division TM6 bacterium JCVI TM6SC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.