STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC13476.1Transcriptional regulator, TetR family. (196 aa)    
Predicted Functional Partners:
AHC13475.1
Putative Co/Zn/Cd efflux system membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.679
AHC13474.1
RND multidrug efflux transporter, Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.674
AHC13473.1
Hypothetical protein.
       0.659
AHC14071.1
Transcriptional regulator, TetR family.
  
     0.500
AHC13472.1
Outer membrane efflux protein.
     
 0.488
AHC13477.1
Hypothetical protein.
       0.472
AHC13911.1
Transcriptional regulator, MarR family.
  
   
 0.453
AHC15466.1
Hypothetical protein.
  
     0.447
AHC13471.1
Serine phosphatase RsbU, regulator of sigma subunit.
     
 0.442
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.