STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC13510.1Phage shock protein A. (268 aa)    
Predicted Functional Partners:
AHC13509.1
Hypothetical protein.
 
     0.906
AHC15332.1
Hypothetical protein.
   
 
 0.785
AHC16050.1
Hypothetical protein.
    
 
 0.758
AHC16669.1
Signal transduction histidine kinase.
  
 
 
 0.709
AHC14491.1
Sensor histidine kinase LiaS.
  
  
 0.696
AHC16617.1
Hypothetical protein.
 
  
 0.683
AHC14706.1
Hypothetical protein.
   
 
 0.679
AHC16379.1
Hypothetical protein.
 
  
 0.670
AHC14948.1
Two-component hybrid sensor and regulator.
    
 
 0.636
AHC14164.1
Hypothetical protein.
    
 
 0.585
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.