Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHC13523.1Membrane protein; Belongs to the BI1 family. (233 aa)    
Predicted Functional Partners:
AHC13522.1
Hypothetical protein.
   
   0.611
hisE
Phosphoribosyl-AMP cyclohydrolase/ Phosphoribosyl-ATP pyrophosphatase.
  
    0.596
hisA
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.
       0.590
AHC13521.1
Hypothetical protein.
       0.568
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
       0.565
AHC13860.1
Peptide methionine sulfoxide reductase MsrB.
  
   0.489
msrB
Peptide methionine sulfoxide reductase MsrB.
  
   0.489
AHC13520.1
tRNA nucleotidyltransferase.
       0.444
AHC15490.1
Peptidase M48, Ste24p precursor.
  
  
 0.437
AHC16569.1
Hypothetical protein.
  
  
 0.437
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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