Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC13538.1Hypothetical protein. (342 aa)    
Predicted Functional Partners:
AHC13541.1
General secretion pathway protein E.
 
 
 0.983
AHC13535.1
General secretion pathway protein G.
  
  
 0.972
AHC13537.1
Hypothetical protein.
       0.773
AHC13539.1
Hypothetical protein.
       0.723
AHC13536.1
Hypothetical protein.
       0.671
AHC13637.1
Single-stranded DNA-binding protein.
  
  
 0.652
AHC14716.1
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.652
AHC13543.1
Hypothetical protein.
  
  
 0.642
AHC14525.1
Hypothetical protein.
  
  
 0.638
AHC13699.1
Hypothetical protein.
    
   0.594
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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