STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC13610.1HIT family hydrolase. (115 aa)    
Predicted Functional Partners:
AHC13609.1
ATP-dependent DNA helicase UvrD/PcrA.
  
    0.764
AHC16279.1
Pyruvate-flavodoxin oxidoreductase.
   
   0.641
AHC13607.1
Hypothetical protein.
       0.602
AHC13608.1
Hypothetical protein.
       0.602
AHC15970.1
MiaB family protein, possibly involved in tRNA or rRNA modification.
 
   0.529
AHC13612.1
Hypothetical protein.
       0.520
AHC13611.1
Hypothetical protein.
       0.501
AHC14629.1
Flagellar hook-associated protein FlgK.
    
   0.495
AHC13606.1
Hypothetical protein.
       0.466
AHC14903.1
Hypothetical protein.
  
 
  0.425
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.