STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC13657.1Aspartate aminotransferase. (288 aa)    
Predicted Functional Partners:
AHC13656.1
Hypothetical protein.
       0.773
AHC13655.1
Hypothetical protein.
       0.752
AHC13654.1
Hypothetical protein.
       0.627
AHC14279.1
NAD(P)H dehydrogenase, quinone.
   
    0.602
AHC15655.1
Proline dehydrogenase(Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase.
  
 
 0.530
AHC14828.1
Glutamate synthase [NADPH] large chain.
  
  
 0.521
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.506
AHC16279.1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.495
AHC16629.1
DNA polymerase III delta subunit.
 
     0.464
AHC13653.1
Multiple sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.462
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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