Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC13678.1Hypothetical protein. (889 aa)    
Predicted Functional Partners:
AHC13680.1
RNA polymerase sigma-54 factor RpoN; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.947
AHC13679.1
ActD.
       0.765
AHC13865.1
Hypothetical protein.
  
     0.607
AHC15558.1
Hypothetical protein.
  
     0.584
AHC13681.1
4-Hydroxy-2-oxoglutarate aldolase/ 2-dehydro-3-deoxyphosphogluconate aldolase.
     
 0.558
AHC15564.1
Membrane-bound lytic murein transglycosylase D precursor.
   
 
 0.557
AHC16693.1
Hypothetical protein.
 
  
 0.538
AHC14328.1
Hypothetical protein.
 
   
 0.535
AHC13551.1
Six-hairpin glycosidase-like protein.
  
     0.512
AHC15599.1
Hypothetical protein.
   
   0.510
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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