Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC13698.1TPR domain protein, putative component of TonB system. (456 aa)    
Predicted Functional Partners:
AHC14454.1
TPR domain protein.
 
 
 0.881
AHC15032.1
Hypothetical protein.
 
 
 0.819
AHC14787.1
Hypothetical protein.
 
 
   0.801
AHC16183.1
Putative cytosolic protein.
 
 
 0.801
AHC14753.1
Hypothetical protein.
 
   
 0.795
AHC13726.1
Hypothetical protein.
 
  
 0.794
AHC14194.1
Hypothetical protein.
 
    0.787
AHC15718.1
Hypothetical protein.
 
     0.787
AHC15145.1
Hypothetical protein.
 
    0.786
AHC15151.1
TPR domain protein.
 
    0.786
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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