STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC13753.1ABC transporter, ATP-binding protein. (231 aa)    
Predicted Functional Partners:
AHC14476.1
ABC transporter permease protein.
 
 0.995
AHC13754.1
Hypothetical protein.
 
 
 0.983
AHC13755.1
ABC transporter, permease protein, putative.
 
 
 0.972
AHC15899.1
Hypothetical protein.
 
 
 0.926
AHC15583.1
ABC-type transport system, involved in lipoprotein release, permease component.
 
 
 0.916
AHC15829.1
ABC transporter ATP-binding protein.
 
   
0.916
AHC16474.1
ABC transporter associated permease.
 
 
 0.915
AHC15582.1
ABC transporter, permease protein.
 
 
 0.907
AHC15830.1
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
    
0.907
AHC15900.1
ABC transporter, permease protein.
 
 
 0.905
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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