Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHC13844.1Phenylalanyl-tRNA synthetase beta chain. (379 aa)    
Predicted Functional Partners:
AHC13843.1
Hypothetical protein.
       0.773
AHC13842.1
Phosphate acetyltransferase.
  
  
 0.747
AHC13845.1
Malonyl CoA-acyl carrier protein transacylase.
   
   0.578
AHC13853.1
2-amino-3-ketobutyrate coenzyme A ligase.
   
 0.552
msrA
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
 
 
  
 0.497
AHC13837.1
Ketoisovalerate oxidoreductase subunit VorC.
 
     0.452
AHC13847.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
  
 0.452
AHC13846.1
3-oxoacyl-[acyl-carrier-protein] synthase, KASII; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.444
buk
Butyrate kinase; Belongs to the acetokinase family.
       0.438
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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