Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC13981.1Hypothetical protein. (1379 aa)    
Predicted Functional Partners:
AHC15719.1
Adenylate cyclase.
 
 
 0.840
AHC15588.1
Adenylate cyclase.
 
  
 0.806
AHC13982.1
Putative transmembrane efflux protein.
     
 0.780
AHC15866.1
Adenylate cyclase.
 
   
 0.769
AHC13867.1
Adenylate cyclase.
 
   
 0.732
AHC15160.1
Adenylate cyclase.
 
   
 0.731
AHC15107.1
Cyclic nucleotide binding domain protein.
 
 
 0.717
AHC16408.1
Adenylate cyclase.
 
   
 0.704
AHC15293.1
Cyclic nucleotide-binding protein.
 
 
 0.686
AHC14177.1
Adenylate cyclase.
 
   
 0.671
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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