Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AHC14032.1Transport ATP-binding protein CydC. (596 aa)    
Predicted Functional Partners:
AHC14031.1
ABC transporter ATP-binding protein.
 
  
 
0.979
AHC14131.1
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
     
0.899
AHC14474.1
ABC transporter, ATP-binding protein.
   
0.767
AHC13753.1
ABC transporter, ATP-binding protein.
    
0.652
AHC13653.1
Multiple sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
   
0.496
AHC13668.1
Histone deacetylase family protein.
   
 0.469
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.466
AHC13572.1
Peptidyl-prolyl cis-trans isomerase.
  
 
 0.460
AHC14792.1
Uridine kinase.
 
 
 0.432
AHC14088.1
Endonuclease.
  
 0.428
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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