Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC14161.1Hypothetical protein. (351 aa)    
Predicted Functional Partners:
AHC13726.1
Hypothetical protein.
 
  
 0.760
AHC14753.1
Hypothetical protein.
 
   
 0.748
AHC16573.1
Hypothetical protein.
  
  
 0.722
AHC14626.1
Acetyltransferase, GNAT family.
  
     0.711
AHC15145.1
Hypothetical protein.
 
 
 0.702
AHC15177.1
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
 
     0.695
AHC16454.1
Hypothetical protein.
 
   
 0.690
AHC13699.1
Hypothetical protein.
 
 
 0.685
AHC14422.1
Hypothetical protein.
  
     0.683
AHC13590.1
Hypothetical protein.
  
     0.674
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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