STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC14163.1GGDEF domain protein. (317 aa)    
Predicted Functional Partners:
AHC15332.1
Hypothetical protein.
 
0.994
AHC16050.1
Hypothetical protein.
 
0.979
AHC14164.1
Hypothetical protein.
 
0.977
AHC14706.1
Hypothetical protein.
 
 0.965
AHC15759.1
Sensory box histidine kinase/response regulator.
 
0.963
AHC13719.1
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
 0.957
AHC14120.1
Hypothetical protein.
   
 0.944
AHC15616.1
Sensor histidine kinase/response regulator.
 
 0.944
AHC14898.1
Response regulator.
  
0.941
AHC14333.1
Phosphate regulon transcriptional regulatory protein PhoB (SphR).
  
0.929
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.