STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC14180.1Transcriptional repressor of arabinoside utilization operon, GntR family. (350 aa)    
Predicted Functional Partners:
AHC13552.1
Ribose operon repressor.
  
     0.775
AHC15545.1
Putative transcriptional regulator (lacI family).
  
     0.774
AHC14828.1
Glutamate synthase [NADPH] large chain.
    
 
 0.736
AHC14179.1
DNA repair protein RadC; Belongs to the UPF0758 family.
       0.576
AHC15536.1
Phosphotransferase system, phosphocarrier protein HPr.
   
 
 0.572
AHC16634.1
Phosphotransferase system, phosphocarrier protein HPr.
   
 
 0.572
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
   0.512
metG
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
   0.455
pheT
Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.455
AHC14178.1
Hypothetical protein.
     
 0.446
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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