STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolDLipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (226 aa)    
Predicted Functional Partners:
AHC14255.1
Hypothetical protein.
 0.990
AHC14476.1
ABC transporter permease protein.
 
 0.987
AHC14253.1
Lipoprotein releasing system transmembrane protein LolC.
 0.982
AHC16278.1
Oligopeptide transport ATP-binding protein OppF.
 
   
0.917
AHC15829.1
ABC transporter ATP-binding protein.
 
   
0.887
AHC15978.1
Amino acid ABC transporter, amino acid-binding/permease protein.
 
 
  
 0.879
AHC16397.1
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
     
0.875
AHC15899.1
Hypothetical protein.
 
 
 0.834
AHC13755.1
ABC transporter, permease protein, putative.
 
 
 0.824
AHC13754.1
Hypothetical protein.
 
 
 0.814
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.