Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AHC14279.1NAD(P)H dehydrogenase, quinone. (214 aa)    
Predicted Functional Partners:
AHC13903.1
Flavoprotein wrbA; Belongs to the WrbA family.
    
 0.923
AHC13545.1
Putative Na(+)/H(+) antiporter.
  
 
 0.590
AHC14285.1
PTS system, fructose-specific component IIA/ IIB/ IIC.
  
 
 0.590
AHC14280.1
PaaD-like protein (DUF59) involved in Fe-S cluster assembly.
       0.538
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.427
AHC15723.1
Carboxynorspermidine decarboxylase, putative.
    
  0.427
AHC14281.1
Iron-sulfur cluster assembly ATPase protein SufC.
       0.409
AHC14282.1
Iron-sulfur cluster assembly protein SufB.
       0.409
AHC14283.1
Iron-sulfur cluster assembly protein SufD.
       0.409
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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