STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC14282.1Iron-sulfur cluster assembly protein SufB. (468 aa)    
Predicted Functional Partners:
AHC14281.1
Iron-sulfur cluster assembly ATPase protein SufC.
 
 0.999
AHC15058.1
Cysteine desulfurase, SufS subfamily; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.993
AHC15059.1
Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2.
 
  
 0.943
AHC14283.1
Iron-sulfur cluster assembly protein SufD.
 
    
0.865
AHC15816.1
Cysteine desulfurase.
 
 0.816
AHC14280.1
PaaD-like protein (DUF59) involved in Fe-S cluster assembly.
 
   
 0.803
AHC16064.1
Sulfur acceptor protein SufE for iron-sulfur cluster assembly.
 
 
 0.626
AHC14284.1
Ferredoxin, 2Fe-2S.
     
 0.547
AHC14279.1
NAD(P)H dehydrogenase, quinone.
       0.410
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.