Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC14321.1Hypothetical protein. (1088 aa)    
Predicted Functional Partners:
AHC14322.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
       0.675
AHC13702.1
Cell division protein FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
   
 
 0.626
AHC14470.1
Hypothetical protein.
  
 
 0.527
AHC14050.1
Hypothetical protein.
    
 
 0.489
AHC14804.1
TolA protein.
    
 
 0.489
AHC14320.1
LSU ribosomal protein L17p; Belongs to the bacterial ribosomal protein bL17 family.
       0.450
AHC16050.1
Hypothetical protein.
   
 
 0.436
AHC13502.1
Carboxyl-terminal protease; Belongs to the peptidase S41A family.
  
 
 0.411
AHC13628.1
Hypothetical protein.
  
 
 0.411
AHC15533.1
Amylopullulanase.
  
 
 0.411
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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