STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC14372.1Alpha/beta hydrolase superfamily. (300 aa)    
Predicted Functional Partners:
AHC14371.1
Hypothetical protein.
 
     0.897
AHC14368.1
D-alanine-D-alanine ligase.
 
   
 0.758
AHC16384.1
Hypothetical protein.
   
 0.719
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.687
AHC15897.1
Hypothetical protein.
  
    0.669
AHC14369.1
Hypothetical protein.
 
     0.625
AHC15558.1
Hypothetical protein.
  
     0.615
AHC13852.1
Hypothetical protein.
  
 
 0.601
AHC14953.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.601
AHC15379.1
Leucyl/phenylalanyl-tRNA--protein transferase.
 
     0.583
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.