STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC14425.1Isoaspartyl dipeptidase, Asp-X dipeptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation. Belongs to the peptidase M38 family. (386 aa)    
Predicted Functional Partners:
pgl
6-phosphogluconolactonase, eukaryotic type; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
  
 
 0.851
nagB
Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. NagB subfamily.
  
 
 0.851
AHC15192.1
Putative competence protein F.
  
    0.657
AHC14424.1
Oxidoreductase domain protein.
  
    0.566
AHC14426.1
Transcriptional regulator, AsnC family.
       0.535
AHC14427.1
Alanine dehydrogenase; Belongs to the AlaDH/PNT family.
       0.535
AHC14428.1
2-amino-4-ketopentanoate thiolase, beta subunit.
     
 0.432
AHC16139.1
Hypothetical protein.
 
     0.430
AHC14818.1
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
    0.429
AHC14429.1
2-amino-4-ketopentanoate thiolase, alpha subunit.
       0.405
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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