STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC14441.12,4-diaminopentanoate dehydrogenase. (367 aa)    
Predicted Functional Partners:
AHC14439.1
D-Ornithine 4,5-aminomutase E subunit.
 
  
  0.989
AHC14440.1
D-Ornithine 4,5-aminomutase S subunit.
 
  
  0.989
AHC14437.1
Ornithine racemase.
 
   
 0.909
AHC14438.1
Putative reactivating factor for D-ornithine aminomutase.
 
     0.902
AHC14429.1
2-amino-4-ketopentanoate thiolase, alpha subunit.
 
     0.803
AHC14428.1
2-amino-4-ketopentanoate thiolase, beta subunit.
 
   
 0.790
AHC14442.1
Carbamate kinase; Belongs to the carbamate kinase family.
       0.530
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.