STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC14447.1Two component, sigma54 specific, transcriptional regulator, Fis family. (503 aa)    
Predicted Functional Partners:
AHC16637.1
RNA polymerase sigma-54 factor RpoN.
 
   
 0.804
AHC15521.1
Hypothetical protein.
 
 
 0.647
AHC14450.1
Transcriptional regulator, Crp/Fnr family.
   
 
 0.547
AHC14448.1
Copper chaperone.
       0.527
AHC15910.1
Chemotaxis protein methyltransferase CheR.
   
 
 0.506
AHC14446.1
Putative peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
     
 0.491
AHC14449.1
Lead, cadmium, zinc and mercury transporting ATPase/ Copper-translocating P-type ATPase.
       0.490
AHC14445.1
Hypothetical protein.
       0.484
AHC16166.1
Signal transduction histidine kinase.
 
 
 
 0.450
AHC16669.1
Signal transduction histidine kinase.
  
 
 0.424
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.