Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AHC14474.1ABC transporter, ATP-binding protein. (225 aa)    
Predicted Functional Partners:
AHC14476.1
ABC transporter permease protein.
 
 0.995
AHC14473.1
Membrane-fusion protein.
 
 
 0.973
AHC13754.1
Hypothetical protein.
 
 
 0.927
AHC13755.1
ABC transporter, permease protein, putative.
 
 
 0.923
AHC15899.1
Hypothetical protein.
 
 
 0.922
AHC13796.1
Hypothetical protein.
   
0.911
AHC15583.1
ABC-type transport system, involved in lipoprotein release, permease component.
 
 
 0.906
AHC15830.1
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
    
0.899
AHC16397.1
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
     
0.898
AHC15582.1
ABC transporter, permease protein.
 
 
 0.889
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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