Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AHC14487.1Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (327 aa)    
Predicted Functional Partners:
AHC14485.1
(GlcNAc)2 ABC transporter, permease component 2.
 
 0.997
AHC15827.1
Dipeptide transport system permease protein DppC.
 
 0.990
AHC16399.1
Oligopeptide transport system permease protein OppC.
 
 0.980
AHC14484.1
(GlcNAc)2 ABC transporter, permease component 1.
 
 
 0.975
AHC14483.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA.
 
 
 0.916
AHC15831.1
Dipeptide transport system permease protein DppB.
 
 0.912
AHC14129.1
Oligopeptide transport system permease protein OppB.
 
 0.901
AHC16276.1
Hypothetical protein.
 
 
 0.898
AHC16400.1
Oligopeptide transport system permease protein OppB.
 
 0.891
AHC14486.1
(GlcNAc)2 ABC transporter, ATP-binding component 1; Belongs to the ABC transporter superfamily.
 
    
0.835
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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