Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHC14488.1Xylose-responsive transcription regulator, ROK family. (390 aa)    
Predicted Functional Partners:
AHC15739.1
Xylose ABC transporter, periplasmic xylose-binding protein XylF.
 
     0.707
AHC15740.1
Xylose ABC transporter, periplasmic xylose-binding protein XylF.
 
     0.684
AHC14485.1
(GlcNAc)2 ABC transporter, permease component 2.
       0.659
AHC14484.1
(GlcNAc)2 ABC transporter, permease component 1.
       0.658
AHC14486.1
(GlcNAc)2 ABC transporter, ATP-binding component 1; Belongs to the ABC transporter superfamily.
       0.658
AHC14487.1
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
       0.658
AHC14483.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA.
 
   
 0.657
AHC15736.1
L-arabinose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.629
AHC15986.1
Glucokinase.
  
     0.622
AHC16432.1
Extracellular solute-binding protein, family 1.
 
  
 0.455
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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