STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHC14508.1Putative ATP-dependent endonuclease, OLD family. (579 aa)    
Predicted Functional Partners:
AHC16002.1
Type I restriction-modification system, specificity subunit S.
 
  
 0.853
AHC16001.1
Type I restriction-modification system, restriction subunit R; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
    0.843
AHC14507.1
Type III restriction-modification system methylation subunit.
       0.756
AHC16364.1
Flavin reductase.
   
    0.727
AHC14109.1
Type I restriction-modification system, DNA-methyltransferase subunit M.
 
  
 0.519
AHC16004.1
Type I restriction-modification system, DNA-methyltransferase subunit M 2.
 
  
 0.508
AHC13631.1
Transporter.
  
    0.475
AHC13692.1
Transporter.
   
    0.473
AHC15411.1
Type I restriction-modification system, DNA-methyltransferase subunit M.
  
  
 0.444
AHC16003.1
Type I restriction-modification system, DNA-methyltransferase subunit M 1.
  
  
 0.444
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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