Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHC14523.1CAAX amino terminal protease family. (214 aa)    
Predicted Functional Partners:
AHC15934.1
ABC-type multidrug transporter, permease component.
  
  
 0.647
AHC16042.1
ABC-type multidrug transport system, permease component.
  
  
 0.647
AHC13771.1
Nitroreductase.
  
  
 0.601
AHC14407.1
Hypothetical protein.
  
  
 0.601
AHC14521.1
Cytochrome c-type biogenesis protein CcdA.
  
    0.583
AHC14068.1
ABC transporter protein.
  
  
 0.519
AHC15083.1
ABC-type multidrug transport system, permease component.
  
  
 0.519
AHC14522.1
ResA-like thiol:disulfide oxidoreductase.
  
  
 0.509
AHC14144.1
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase.
  
    0.461
AHC15330.1
YbbM seven transmembrane helix protein.
  
    0.442
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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