Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHC14633.1TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA. (285 aa)    
Predicted Functional Partners:
AHC14634.1
ATPase YjeE, predicted to have essential role in cell wall biosynthesis.
 
 0.999
tsaD
YgjD/Kae1/Qri7 family, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 
 0.931
AHC14635.1
Hypothetical protein.
     
 0.770
AHC15764.1
Uracil-DNA glycosylase, family 4.
  
    0.656
AHC16790.1
Hypothetical protein; Belongs to the SUA5 family.
 
  
 0.652
AHC14287.1
TsaC protein; Belongs to the SUA5 family.
    
 0.606
AHC16156.1
Biotin-protein ligase.
  
    0.598
AHC14637.1
Hypothetical protein.
       0.558
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
   
 0.558
AHC14636.1
Hypothetical protein.
       0.548
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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