Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC14712.1Hypothetical protein. (151 aa)    
Predicted Functional Partners:
AHC14577.1
Flagellar hook-basal body complex protein FliE.
    
   0.596
AHC16642.1
Chemotaxis protein methyltransferase CheR.
    
   0.596
AHC14713.1
Hypothetical protein.
       0.565
AHC14711.1
Nitrogenase (molybdenum-iron)-specific transcriptional regulator NifA.
       0.539
AHC14714.1
Hypothetical protein.
       0.519
AHC14643.1
Flagellin protein FlaA; Component of the core of the flagella. Belongs to the bacterial flagellin family.
    
   0.480
AHC15133.1
Flagellin protein FlaA; Component of the core of the flagella. Belongs to the bacterial flagellin family.
    
   0.480
AHC15279.1
Positive regulator of CheA protein activity (CheW).
    
   0.470
AHC15885.1
Chemotaxis protein methyltransferase CheR.
    
   0.470
AHC15910.1
Chemotaxis protein methyltransferase CheR.
    
   0.470
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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