Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AHC14749.1Biopolymer transport protein ExbD/TolR. (179 aa)    
Predicted Functional Partners:
AHC14748.1
MotA/TolQ/ExbB proton channel family protein.
 
 
 0.998
AHC14750.1
Hypothetical protein.
       0.773
AHC14746.1
Hypothetical protein.
 
  
 0.665
AHC14050.1
Hypothetical protein.
  
 
 0.661
AHC14804.1
TolA protein.
  
 
 0.661
AHC14751.1
2-haloalkanoic acid dehalogenase.
       0.612
AHC16638.1
Lipopolysaccharide ABC transporter, ATP-binding protein LptB.
 
   
 0.528
AHC14747.1
Hypothetical protein.
       0.519
AHC14745.1
Hypothetical protein.
       0.497
AHC15182.1
Putative membrane protein, YjgP/YjgQ family.
  
     0.492
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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