Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AHC14937.1Hypothetical protein. (293 aa)    
Predicted Functional Partners:
AHC13717.1
NAD-reducing hydrogenase subunit HoxF.
  
 0.938
rnfB
Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
   
 0.923
AHC16439.1
Deoxyadenosine kinase/ Deoxyguanosine kinase.
   
 0.841
AHC16224.1
Succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.817
AHC15492.1
Putative zinc protease pqqL; Belongs to the peptidase M16 family.
   
 
 0.809
AHC14939.1
Multi antimicrobial extrusion protein (Na(+)/drug antiporter).
 
   
 0.803
AHC13714.1
NAD-reducing hydrogenase subunit HoxE.
   
 0.802
AHC13974.1
Hypothetical protein.
   
 0.802
AHC13977.1
Hypothetical protein.
   
 0.802
AHC14938.1
Hypothetical protein.
       0.783
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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