Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AHC14961.1Peptidyl-prolyl cis-trans isomerase PpiD. (324 aa)    
Predicted Functional Partners:
AHC13572.1
Peptidyl-prolyl cis-trans isomerase.
  
 0.858
AHC15197.1
Outer membrane protein assembly factor YaeT precursor.
  
 
 0.640
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.578
AHC14960.1
ATP-dependent helicase HrpB.
  
    0.559
AHC15117.1
Hypothetical protein.
   
 
 0.541
AHC15419.1
Hypothetical protein.
   
 
 0.536
AHC15994.1
Serine/threonine protein kinase related protein.
   
 
 0.536
AHC16279.1
Pyruvate-flavodoxin oxidoreductase.
   
 
 0.470
AHC14959.1
Cobalt-zinc-cadmium resistance protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
    0.467
AHC14746.1
Hypothetical protein.
 
   0.448
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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