Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHC15016.1Peptidase, U32 family protein large subunit. (419 aa)    
Predicted Functional Partners:
AHC13918.1
macrocin-O-methyltransferase domain protein.
  
  
 0.821
rnfB
Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
 0.725
lon
ATP-dependent protease LaType I; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
   
 
 0.721
AHC15017.1
D-alanyl-D-alanine carboxypeptidase.
       0.686
AHC13717.1
NAD-reducing hydrogenase subunit HoxF.
  
   0.652
AHC14054.1
Hypothetical protein, putative YesF.
   
 
 0.613
AHC14937.1
Hypothetical protein.
   
 
 0.613
AHC14662.1
Protein-L-isoaspartate O-methyltransferase.
  
   0.610
AHC13714.1
NAD-reducing hydrogenase subunit HoxE.
   
   0.522
AHC13974.1
Hypothetical protein.
   
   0.522
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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