Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AHC15028.1Transcriptional regulator. (307 aa)    
Predicted Functional Partners:
AHC15029.1
Putative phosphoesterase.
 
     0.951
AHC15030.1
TPR domain protein.
 
     0.694
AHC13470.1
Alpha-amylase family protein.
  
    0.659
AHC14537.1
Uracil phosphoribosyltransferase.
  
     0.586
AHC15334.1
Phosphoglucomutase (femD).
  
  
 0.584
AHC16829.1
Trehalase.
  
     0.562
AHC14005.1
Transcriptional regulator, DeoR family.
  
     0.556
AHC16636.1
Ribosomal subunit interface protein, putative.
 
  
 0.544
AHC15031.1
TPR domain protein.
 
     0.539
AHC15233.1
Hypoxanthine-guanine phosphoribosyltransferase.
  
   
 0.485
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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