Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC15032.1Hypothetical protein. (644 aa)    
Predicted Functional Partners:
AHC15030.1
TPR domain protein.
 
     0.863
AHC13572.1
Peptidyl-prolyl cis-trans isomerase.
  
 0.841
AHC15031.1
TPR domain protein.
 
     0.826
AHC13698.1
TPR domain protein, putative component of TonB system.
 
 
 0.819
AHC15244.1
Hypothetical protein.
 
 
 0.780
AHC14533.1
TPR domain protein.
 
 
 
 0.768
AHC14454.1
TPR domain protein.
  
     0.764
AHC16214.1
Hypothetical protein.
 
     0.763
AHC14786.1
TPR domain protein.
  
     0.735
AHC15300.1
Ankyrin.
 
 0.694
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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