Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC15069.1Hypothetical protein. (366 aa)    
Predicted Functional Partners:
AHC15067.1
Hypothetical protein.
 
     0.679
AHC15533.1
Amylopullulanase.
 
    0.618
AHC16305.1
Hydroxymethylglutaryl-CoA synthase.
 
 
 
 0.608
AHC15068.1
Hypothetical protein.
       0.556
AHC15677.1
Putative sterol desaturase.
   
 
 0.514
AHC16390.1
Beta-carotene hydroxylase.
   
 
 0.514
AHC14902.1
Putative DNA helicase.
 
    0.508
AHC13848.1
Hydroxymethylglutaryl-CoA synthase.
   
 
 0.498
AHC16475.1
Cell division protein FtsX.
  
     0.498
AHC15606.1
Hypothetical protein.
  
     0.478
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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