Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AHC15082.1ABC transporter, ATP-binding protein. (283 aa)    
Predicted Functional Partners:
AHC14068.1
ABC transporter protein.
 
 
 0.972
AHC15084.1
ABC transport system, permease component YbhR.
 
  
 0.971
AHC14176.1
D-alanyl-D-alanine carboxypeptidase.
 
 
 0.956
AHC15083.1
ABC-type multidrug transport system, permease component.
  
 
 0.926
AHC14174.1
ABC transporter, ATP-binding protein.
 
  
 
0.915
AHC15343.1
Branched-chain amino acid transport ATP-binding protein LivF.
 
    
0.903
AHC14070.1
ABC transporter, ATP-binding protein.
  
  
 
0.902
AHC14067.1
ABC transporter permease protein.
    
 0.810
AHC14175.1
Hypothetical protein.
     
  0.800
AHC15004.1
Gliding motility protein GldF.
  
 
 0.719
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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