Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHC15145.1Hypothetical protein. (1353 aa)    
Predicted Functional Partners:
AHC14578.1
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
 
 0.848
AHC15143.1
Hypothetical protein.
 
     0.834
AHC14804.1
TolA protein.
 
  
 0.795
AHC14753.1
Hypothetical protein.
 
  
 0.787
AHC13698.1
TPR domain protein, putative component of TonB system.
 
    0.786
AHC15030.1
TPR domain protein.
  
 
 
 0.782
AHC15142.1
Hypothetical protein.
  
    0.782
AHC14787.1
Hypothetical protein.
 
    0.778
AHC13590.1
Hypothetical protein.
  
     0.774
AHC15144.1
Hypothetical protein.
       0.773
Your Current Organism:
Salinispira pacifica
NCBI taxonomy Id: 1307761
Other names: DSM 27196, JCM 18663, S. pacifica, Salinispira pacifica Ben Hania et al. 2015, Spirochaeta sp. L21-RPul-D2, strain L21-RPul-D2
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